To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
Pillar Point
GBIF Taxonomic Comparison
To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
GBIF unique species: 726
GBIF unique species with NCBI ID: 622
GBIF unique species with eDNA match: 48
Taxon | GBIF Occurences | NCBI Match | eDNA Match |
---|---|---|---|
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Asteroidea, Valvatida, Asteropseidae, Dermasterias, Dermasterias imbricata GBIFAnimalia, Echinodermata, Asteroidea, Valvatida, Asteropseidae, Dermasterias, Dermasterias imbricata GBIF ID: 2271961 NCBI |
289 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Echinoidea, Camarodonta, Strongylocentrotidae, Mesocentrotus, Mesocentrotus franciscanus GBIFAnimalia, Echinodermata, Echinoidea, Camarodonta, Strongylocentrotidae, Mesocentrotus, Mesocentrotus franciscanus GBIF ID: 2278859 NCBI |
53 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Echinoidea, Camarodonta, Strongylocentrotidae, Strongylocentrotus, Strongylocentrotus purpuratus GBIFAnimalia, Echinodermata, Echinoidea, Camarodonta, Strongylocentrotidae, Strongylocentrotus, Strongylocentrotus purpuratus GBIF ID: 2278852 NCBIEukaryota, Metazoa, Echinodermata, Echinoidea, Echinoida, Strongylocentrotidae, Strongylocentrotus, Strongylocentrotus purpuratus NCBI ID: 7668, CALeDNA page |
185 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Echinoidea, Clypeasteroida, Dendrasteridae, Dendraster, Dendraster excentricus GBIFAnimalia, Echinodermata, Echinoidea, Clypeasteroida, Dendrasteridae, Dendraster, Dendraster excentricus GBIF ID: 2279084 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Holothuroidea, Apodida, Synaptidae, Leptosynapta, Leptosynapta albicans GBIFAnimalia, Echinodermata, Holothuroidea, Apodida, Synaptidae, Leptosynapta, Leptosynapta albicans GBIF ID: 2279535 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Holothuroidea, Dendrochirotida, Cucumariidae, Cucumaria, Cucumaria miniata GBIFAnimalia, Echinodermata, Holothuroidea, Dendrochirotida, Cucumariidae, Cucumaria, Cucumaria miniata GBIF ID: 5188234 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Holothuroidea, Dendrochirotida, Cucumariidae, Cucumaria, Cucumaria piperata GBIFAnimalia, Echinodermata, Holothuroidea, Dendrochirotida, Cucumariidae, Cucumaria, Cucumaria piperata GBIF ID: 5188247 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Holothuroidea, Dendrochirotida, Psolidae, Lissothuria, Lissothuria nutriens GBIFAnimalia, Echinodermata, Holothuroidea, Dendrochirotida, Psolidae, Lissothuria, Lissothuria nutriens GBIF ID: 2279375 NCBI |
34 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Holothuroidea, Dendrochirotida, Sclerodactylidae, Eupentacta, Eupentacta quinquesemita GBIFAnimalia, Echinodermata, Holothuroidea, Dendrochirotida, Sclerodactylidae, Eupentacta, Eupentacta quinquesemita GBIF ID: 2279404 NCBI |
18 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Amphiuridae, Amphiodia, Amphiodia akosmos GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Amphiuridae, Amphiodia, Amphiodia akosmos GBIF ID: 2277741 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Amphiuridae, Amphiodia, Amphiodia occidentalis GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Amphiuridae, Amphiodia, Amphiodia occidentalis GBIF ID: 2277732 NCBI |
16 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Amphiuridae, Amphipholis, Amphipholis squamata GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Amphiuridae, Amphipholis, Amphipholis squamata GBIF ID: 2278157 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Ophiopholidae, Ophiopholis, Ophiopholis aculeata GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Ophiopholidae, Ophiopholis, Ophiopholis aculeata GBIF ID: 2276107 NCBI |
4 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Ophiopholidae, Ophiopholis, Ophiopholis kennerlyi GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Ophiopholidae, Ophiopholis, Ophiopholis kennerlyi GBIF ID: 2276116 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Echinodermata, Ophiuroidea, Ophiurida, Ophiotrichidae, Ophiothrix, Ophiothrix spiculata GBIFAnimalia, Echinodermata, Ophiuroidea, Amphilepidida, Ophiotrichidae, Ophiothrix, Ophiothrix spiculata GBIF ID: 5187866 NCBI |
62 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Carditida, Carditidae, Glans, Glans carpenteri GBIFAnimalia, Mollusca, Bivalvia, Carditida, Carditidae, Glans, Glans carpenteri GBIF ID: 2286633 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Myida, Myidae, Mya, Mya arenaria GBIFAnimalia, Mollusca, Bivalvia, Myida, Myidae, Mya, Mya arenaria GBIF ID: 7791733 NCBI |
4 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Myida, Myidae, Platyodon, Platyodon cancellatus GBIFAnimalia, Mollusca, Bivalvia, Myida, Myidae, Platyodon, Platyodon cancellatus GBIF ID: 5189540 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Myida, Pholadidae, Chaceia, Chaceia ovoidea GBIFAnimalia, Mollusca, Bivalvia, Myida, Pholadidae, Chaceia, Chaceia ovoidea GBIF ID: 2288767 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Myida, Pholadidae, Parapholas, Parapholas californica GBIFAnimalia, Mollusca, Bivalvia, Myida, Pholadidae, Parapholas, Parapholas californica GBIF ID: 2288769 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Myida, Pholadidae, Zirfaea, Zirfaea pilsbryi GBIFAnimalia, Mollusca, Bivalvia, Myida, Pholadidae, Zirfaea, Zirfaea pilsbryi GBIF ID: 2288787 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Mytilida, Mytilidae, Adula, Adula gruneri GBIFAnimalia, Mollusca, Bivalvia, Mytilida, Mytilidae, Adula, Adula gruneri GBIF ID: 5188860 NCBI |
7 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Mytilida, Mytilidae, Mytilus, Mytilus californianus GBIFAnimalia, Mollusca, Bivalvia, Mytilida, Mytilidae, Mytilus, Mytilus californianus GBIF ID: 2285680 NCBI |
75 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Pectinida, Anomiidae, Pododesmus, Pododesmus macrochisma GBIFAnimalia, Mollusca, Bivalvia, Pectinida, Anomiidae, Pododesmus, Pododesmus macrochisma GBIF ID: 2286130 NCBI |
7 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Pectinida, Pectinidae, Crassadoma, Crassadoma gigantea GBIFAnimalia, Mollusca, Bivalvia, Pectinida, Pectinidae, Crassadoma, Crassadoma gigantea GBIF ID: 2285940 NCBIEukaryota, Metazoa, Mollusca, Bivalvia, Pectinoida, Pectinidae, Crassadoma, Crassadoma gigantea NCBI ID: 50415, CALeDNA page |
69 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Pholadomyida, Lyonsiidae, Mytilimeria, Mytilimeria nuttalli GBIFAnimalia, Mollusca, Bivalvia, --, Lyonsiidae, Mytilimeria, Mytilimeria nuttalli GBIF ID: 2288613 NCBI |
11 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Cardiidae, Clinocardium, Clinocardium nuttallii GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Cardiidae, Clinocardium, Clinocardium nuttallii GBIF ID: 2286559 NCBI |
11 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Mactridae, Tresus, Tresus nuttallii GBIFAnimalia, Mollusca, Bivalvia, Venerida, Mactridae, Tresus, Tresus nuttallii GBIF ID: 5188977 NCBI |
8 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Pharidae, Siliqua, Siliqua patula GBIFAnimalia, Mollusca, Bivalvia, Adapedonta, Pharidae, Siliqua, Siliqua patula GBIF ID: 5189153 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Psammobiidae, Gari, Gari californica GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Psammobiidae, Gari, Gari californica GBIF ID: 5189089 NCBI |
9 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Semelidae, Semele, Semele rubropicta GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Semelidae, Semele, Semele rubropicta GBIF ID: 5189074 NCBI |
9 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Semelidae, Semele, Semele rupicola GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Semelidae, Semele, Semele rupicola GBIF ID: 5189076 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Solenidae, Solen, Solen sicarius GBIFAnimalia, Mollusca, Bivalvia, Adapedonta, Solenidae, Solen, Solen sicarius GBIF ID: 2287238 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Tellinidae, Macoma, Macoma nasuta GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Tellinidae, Macoma, Macoma nasuta GBIF ID: 2286989 NCBI |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Tellinidae, Rexithaerus, Rexithaerus secta GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Tellinidae, Rexithaerus, Rexithaerus secta GBIF ID: 2286991 NCBI |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Ungulinidae, Diplodonta, Diplodonta orbella GBIFAnimalia, Mollusca, Bivalvia, Cardiida, Ungulinidae, Diplodonta, Diplodonta orbella GBIF ID: 5189251 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Veneridae, Callithaca, Callithaca tenerrima GBIFAnimalia, Mollusca, Bivalvia, Venerida, Veneridae, Callithaca, Callithaca tenerrima GBIF ID: 5855761 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Veneridae, Leukoma, Leukoma staminea GBIFAnimalia, Mollusca, Bivalvia, Venerida, Veneridae, Leukoma, Leukoma staminea GBIF ID: 5855840 NCBI |
26 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Veneridae, Petricola, Petricola carditoides GBIFAnimalia, Mollusca, Bivalvia, Venerida, Veneridae, Petricola, Petricola carditoides GBIF ID: 2287610 NCBI |
6 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Bivalvia, Veneroida, Veneridae, Saxidomus, Saxidomus nuttalli GBIFAnimalia, Mollusca, Bivalvia, Venerida, Veneridae, Saxidomus, Saxidomus nuttalli GBIF ID: 2287848 NCBI |
6 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Cephalopoda, Octopoda, Enteroctopodidae, Enteroctopus, Enteroctopus dofleini GBIFAnimalia, Mollusca, Cephalopoda, Octopoda, Enteroctopodidae, Enteroctopus, Enteroctopus dofleini GBIF ID: 2289485 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Cephalopoda, Octopoda, Octopodidae, Octopus, Octopus rubescens GBIFAnimalia, Mollusca, Cephalopoda, Octopoda, Octopodidae, Octopus, Octopus rubescens GBIF ID: 2289636 NCBI |
99 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Cephalopoda, Teuthida, Loliginidae, Doryteuthis, Doryteuthis opalescens GBIFAnimalia, Mollusca, Cephalopoda, Myopsida, Loliginidae, Doryteuthis, Doryteuthis opalescens GBIF ID: 5855962 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Anaspidea, Aplysiidae, Aplysia, Aplysia californica GBIFAnimalia, Mollusca, Gastropoda, Aplysiida, Aplysiidae, Aplysia, Aplysia californica GBIF ID: 5191261 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Cephalaspidea, Diaphanidae, Diaphana, Diaphana californica GBIFAnimalia, Mollusca, Gastropoda, Cephalaspidea, Diaphanidae, Diaphana, Diaphana californica GBIF ID: 5190023 NCBI |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Ellobiida, Trimusculidae, Trimusculus, Trimusculus reticulatus GBIFAnimalia, Mollusca, Gastropoda, Ellobiida, Trimusculidae, Trimusculus, Trimusculus reticulatus GBIF ID: 2291232 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Lepetellida, Fissurellidae, Diodora, Diodora aspera GBIFAnimalia, Mollusca, Gastropoda, Lepetellida, Fissurellidae, Diodora, Diodora aspera GBIF ID: 2293576 NCBI |
40 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Lepetellida, Fissurellidae, Fissurellidea, Fissurellidea bimaculata GBIFAnimalia, Mollusca, Gastropoda, Lepetellida, Fissurellidae, Fissurellidea, Fissurellidea bimaculata GBIF ID: 2293426 NCBI |
41 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Lepetellida, Haliotidae, Haliotis, Haliotis rufescens GBIFAnimalia, Mollusca, Gastropoda, Lepetellida, Haliotidae, Haliotis, Haliotis rufescens GBIF ID: 2293078 NCBI |
31 | ||
Normalized Taxa
Eukaryota, Animalia, Mollusca, Gastropoda, Littorinimorpha, Calyptraeidae, Crepidula, Crepidula adunca GBIFAnimalia, Mollusca, Gastropoda, Littorinimorpha, Calyptraeidae, Crepidula, Crepidula adunca GBIF ID: 5192785 NCBI |
25 |