To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
Pillar Point
GBIF Taxonomic Comparison
To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
GBIF unique genus: 563
GBIF unique genus with NCBI ID: 538
GBIF unique genus with eDNA match: 93
Taxon | GBIF Occurences | NCBI Match | eDNA Match |
---|---|---|---|
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Aulopiformes, Alepisauridae, Alepisaurus GBIFAnimalia, Chordata, Actinopterygii, Aulopiformes, Alepisauridae, Alepisaurus GBIF ID: 2401689 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Batrachoidiformes, Batrachoididae, Porichthys GBIFAnimalia, Chordata, Actinopterygii, Batrachoidiformes, Batrachoididae, Porichthys GBIF ID: 2350811 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Blenniiformes, Gobiesocidae, Gobiesox GBIFAnimalia, Chordata, Actinopterygii, Gobiesociformes, Gobiesocidae, Gobiesox GBIF ID: 2411258 NCBI |
21 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Clupeiformes, Clupeidae, Clupea GBIFAnimalia, Chordata, Actinopterygii, Clupeiformes, Clupeidae, Clupea GBIF ID: 2346676 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Clupeiformes, Engraulidae, Engraulis GBIFAnimalia, Chordata, Actinopterygii, Clupeiformes, Engraulidae, Engraulis GBIF ID: 2352080 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Clupeiformes, Engraulidae, Engraulis NCBI ID: 42891, CALeDNA page |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Gadiformes, Merlucciidae, Merluccius GBIFAnimalia, Chordata, Actinopterygii, Gadiformes, Merlucciidae, Merluccius GBIF ID: 2415629 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Gadiformes, Merlucciidae, Merluccius NCBI ID: 8062, CALeDNA page |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Lampridiformes, Lampridae, Lampris GBIFAnimalia, Chordata, Actinopterygii, Lampriformes, Lampridae, Lampris GBIF ID: 2400461 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Ophidiiformes, Bythitidae, Brosmophycis GBIFAnimalia, Chordata, Actinopterygii, Ophidiiformes, Bythitidae, Brosmophycis GBIF ID: 2346158 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Ophidiiformes, Ophidiidae, Chilara GBIFAnimalia, Chordata, Actinopterygii, Ophidiiformes, Ophidiidae, Chilara GBIF ID: 2345933 NCBI |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Osmeriformes, Osmeridae, Spirinchus GBIFAnimalia, Chordata, Actinopterygii, Osmeriformes, Osmeridae, Spirinchus GBIF ID: 2410894 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Osmeriformes, Osmeridae, Spirinchus NCBI ID: 136039, CALeDNA page |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Aulorhynchidae, Aulorhynchus GBIFAnimalia, Chordata, Actinopterygii, Gasterosteiformes, Aulorhynchidae, Aulorhynchus GBIF ID: 2356480 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Clinidae, Gibbonsia GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Clinidae, Gibbonsia GBIF ID: 2380263 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Blenniiformes, Clinidae, Gibbonsia NCBI ID: 57800, CALeDNA page |
7 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Clinidae, Heterostichus GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Clinidae, Heterostichus GBIF ID: 2380181 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Artedius GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Artedius GBIF ID: 2333960 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Cottidae, Artedius NCBI ID: 274757, CALeDNA page |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Ascelichthys GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Ascelichthys GBIF ID: 2334020 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Clinocottus GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Clinocottus GBIF ID: 2333865 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Cottidae, Clinocottus NCBI ID: 283632, CALeDNA page |
14 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Enophrys GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Enophrys GBIF ID: 2333763 NCBI |
12 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Leptocottus GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Leptocottus GBIF ID: 2333922 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Cottidae, Leptocottus NCBI ID: 214924, CALeDNA page |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Oligocottus GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Oligocottus GBIF ID: 2333736 NCBI |
35 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Cottidae, Scorpaenichthys GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Cottidae, Scorpaenichthys GBIF ID: 2334338 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Cottidae, Scorpaenichthys NCBI ID: 52272, CALeDNA page |
13 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Embiotocidae, Amphistichus GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Embiotocidae, Amphistichus GBIF ID: 2389247 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Embiotocidae, Cymatogaster GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Embiotocidae, Cymatogaster GBIF ID: 2389233 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Embiotocidae, Hyperprosopon GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Embiotocidae, Hyperprosopon GBIF ID: 2389296 NCBI |
4 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Embiotocidae, Micrometrus GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Embiotocidae, Micrometrus GBIF ID: 2389239 NCBI |
4 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Gobiidae, Lepidogobius GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Gobiidae, Lepidogobius GBIF ID: 2379181 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Gobiidae, Rhinogobiops GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Gobiidae, Rhinogobiops GBIF ID: 2376635 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Hexagrammidae, Hexagrammos GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Hexagrammidae, Hexagrammos GBIF ID: 2336463 NCBI |
4 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Hexagrammidae, Ophiodon GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Hexagrammidae, Ophiodon GBIF ID: 2336520 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Hexagrammidae, Ophiodon NCBI ID: 225386, CALeDNA page |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Pholidae, Apodichthys GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Pholidae, Apodichthys GBIF ID: 2390387 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Pholidae, Apodichthys NCBI ID: 57778, CALeDNA page |
14 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Sciaenidae, Atractoscion GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Sciaenidae, Atractoscion GBIF ID: 2400361 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Scombridae, Scomber GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Scombridae, Scomber GBIF ID: 2374148 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Sebastidae, Sebastes GBIFAnimalia, Chordata, Actinopterygii, Scorpaeniformes, Sebastidae, Sebastes GBIF ID: 2333712 NCBI |
14 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Stichaeidae, Anoplarchus GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Stichaeidae, Anoplarchus GBIF ID: 2394913 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Stichaeidae, Anoplarchus NCBI ID: 320622, CALeDNA page |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Stichaeidae, Cebidichthys GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Stichaeidae, Cebidichthys GBIF ID: 2394759 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Stichaeidae, Cebidichthys NCBI ID: 271502, CALeDNA page |
14 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Perciformes, Stichaeidae, Xiphister GBIFAnimalia, Chordata, Actinopterygii, Perciformes, Stichaeidae, Xiphister GBIF ID: 2394808 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Perciformes, Stichaeidae, Xiphister NCBI ID: 283023, CALeDNA page |
6 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Pleuronectiformes, Paralichthyidae, Citharichthys GBIFAnimalia, Chordata, Actinopterygii, Pleuronectiformes, Paralichthyidae, Citharichthys GBIF ID: 2408301 NCBIEukaryota, Metazoa, Chordata, Actinopteri, Pleuronectiformes, Paralichthyidae, Citharichthys NCBI ID: 195599, CALeDNA page |
3 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Pleuronectiformes, Pleuronectidae, Parophrys GBIFAnimalia, Chordata, Actinopterygii, Pleuronectiformes, Pleuronectidae, Parophrys GBIF ID: 2409369 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Pleuronectiformes, Pleuronectidae, Pleuronichthys GBIFAnimalia, Chordata, Actinopterygii, Pleuronectiformes, Pleuronectidae, Pleuronichthys GBIF ID: 2409240 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Chordata, Teleostei, Syngnathiformes, Syngnathidae, Syngnathus GBIFAnimalia, Chordata, Actinopterygii, Syngnathiformes, Syngnathidae, Syngnathus GBIF ID: 2332887 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Anthopleura GBIFAnimalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Anthopleura GBIF ID: 2256813 NCBIEukaryota, Metazoa, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Anthopleura NCBI ID: 6109, CALeDNA page |
633 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Epiactis GBIFAnimalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Epiactis GBIF ID: 2255932 NCBIEukaryota, Metazoa, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Epiactis NCBI ID: 58803, CALeDNA page |
173 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Urticina GBIFAnimalia, Cnidaria, Anthozoa, Actiniaria, Actiniidae, Urticina GBIF ID: 2256124 NCBI |
6 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Actiniaria, Halcampidae, Halcampa GBIFAnimalia, Cnidaria, Anthozoa, Actiniaria, Halcampidae, Halcampa GBIF ID: 2255928 NCBI |
6 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Actiniaria, Metridiidae, Metridium GBIFAnimalia, Cnidaria, Anthozoa, Actiniaria, Metridiidae, Metridium GBIF ID: 2255724 NCBI |
7 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Alcyonacea, Alcyoniidae, Discophyton GBIFAnimalia, Cnidaria, Anthozoa, Alcyonacea, Alcyoniidae, Discophyton GBIF ID: 2263714 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Alcyonacea, Alcyoniidae, Thrombophyton GBIFAnimalia, Cnidaria, Anthozoa, Alcyonacea, Alcyoniidae, Thrombophyton GBIF ID: 2263702 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Corallimorpharia, Corallimorphidae, Corynactis GBIFAnimalia, Cnidaria, Anthozoa, Corallimorpharia, Corallimorphidae, Corynactis GBIF ID: 2256373 NCBI |
39 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Anthozoa, Scleractinia, Dendrophylliidae, Balanophyllia GBIFAnimalia, Cnidaria, Anthozoa, Scleractinia, Dendrophylliidae, Balanophyllia GBIF ID: 2259608 NCBI |
5 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Hydrozoa, Anthoathecata, Corynidae, Polyorchis GBIFAnimalia, Cnidaria, Hydrozoa, Anthoathecata, Corynidae, Polyorchis GBIF ID: 2265252 NCBI |
2 | ||
Normalized Taxa
Eukaryota, Animalia, Cnidaria, Hydrozoa, Anthoathecata, Corynidae, Scrippsia GBIFAnimalia, Cnidaria, Hydrozoa, Anthoathecata, Corynidae, Scrippsia GBIF ID: 2265257 NCBI |
13 |