To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
Pillar Point
GBIF Taxonomic Comparison
To find out how eDNA complements GBIF data, we looked at whether or not there was a eDNA match for each GBIF taxa. While eDNA and GBIF have a high match rate at the higher taxonomic levels (phylum, class, order), there is low match rate at lower taxonomic levels (genus and species).
GBIF unique order: 156
GBIF unique order with NCBI ID: 156
GBIF unique order with eDNA match: 103
Taxon | GBIF Occurences | NCBI Match | eDNA Match |
---|---|---|---|
Normalized Taxa
Eukaryota, Plantae, Tracheophyta, Magnoliopsida, Saxifragales GBIFPlantae, Tracheophyta, Magnoliopsida, Saxifragales GBIF ID: 7219248 NCBI |
3 | ||
Normalized Taxa
Eukaryota, Plantae, Tracheophyta, Magnoliopsida, Solanales GBIFPlantae, Tracheophyta, Magnoliopsida, Solanales GBIF ID: 1176 NCBIEukaryota, Viridiplantae, Streptophyta, --, Solanales NCBI ID: 4069, CALeDNA page |
1 | ||
Normalized Taxa
Eukaryota, Plantae, Tracheophyta, Pinopsida, Pinales GBIFPlantae, Tracheophyta, Pinopsida, Pinales GBIF ID: 640 NCBIEukaryota, Viridiplantae, Streptophyta, --, Pinales NCBI ID: 1446380, CALeDNA page |
1 | ||
Normalized Taxa
Eukaryota, Plantae, Tracheophyta, Polypodiopsida, Equisetales GBIFPlantae, Tracheophyta, Equisetopsida, Equisetales GBIF ID: 954 NCBIEukaryota, Viridiplantae, Streptophyta, Polypodiopsida, Equisetales NCBI ID: 3255, CALeDNA page |
2 | ||
Normalized Taxa
Eukaryota, Plantae, Tracheophyta, Polypodiopsida, Polypodiales GBIFPlantae, Tracheophyta, Polypodiopsida, Polypodiales GBIF ID: 392 NCBI |
1 | ||
Normalized Taxa
Eukaryota, Protozoa, Choanozoa, Choanoflagellatea, Craspedida GBIFFungi, Ascomycota, Dothideomycetes, Mycosphaerellales GBIF ID: 9783671 NCBIEukaryota, --, --, --, Choanoflagellida NCBI ID: 1924738, CALeDNA page |
1 |